Variant report

Variant	rs1111887
Chromosome Location	chr8:102702737-102702738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102699783..102701302-chr8:102702548..102704933,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4734582	0.81[JPT][hapmap]
rs4734583	1.00[JPT][hapmap]
rs4734589	0.86[CHB][hapmap]
rs7841416	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102696600-102704600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:102696600-102708400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:102697000-102703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:102697000-102706600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:102697600-102713000	Weak transcription	Psoas Muscle	Psoas
6	chr8:102697800-102703000	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:102697800-102706800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:102698200-102706000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:102698600-102704600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:102698800-102705600	Weak transcription	Colonic Mucosa	Colon
11	chr8:102699000-102705800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:102699600-102705200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:102700000-102704600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
16	chr8:102700200-102702800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:102700400-102703000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:102700400-102706800	Weak transcription	Esophagus	oesophagus
19	chr8:102700600-102702800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:102701200-102706200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:102701200-102713200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr8:102701600-102702800	Bivalent Enhancer	Placenta	Placenta
23	chr8:102701600-102705000	Enhancers	Ovary	ovary
24	chr8:102701600-102705400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr8:102701600-102708600	Weak transcription	GM12878-XiMat	blood
26	chr8:102701800-102703200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:102701800-102703400	Genic enhancers	Fetal Muscle Trunk	muscle
28	chr8:102701800-102703400	Flanking Active TSS	Hela-S3	cervix
29	chr8:102701800-102703800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr8:102701800-102703800	Enhancers	Right Atrium	heart
31	chr8:102701800-102704000	Enhancers	Fetal Intestine Large	intestine
32	chr8:102701800-102704000	Enhancers	Fetal Intestine Small	intestine
33	chr8:102701800-102704200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr8:102701800-102704600	Enhancers	Colon Smooth Muscle	Colon
35	chr8:102701800-102709400	Weak transcription	Gastric	stomach
36	chr8:102702000-102702800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr8:102702000-102703000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:102702000-102703000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:102702000-102703000	Enhancers	HepG2	liver
40	chr8:102702000-102703200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:102702000-102703400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:102702000-102703800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr8:102702000-102703800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:102702000-102703800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr8:102702000-102704000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:102702000-102704000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr8:102702000-102704000	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr8:102702000-102704000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr8:102702000-102704000	Genic enhancers	Fetal Stomach	stomach
50	chr8:102702000-102704200	Enhancers	Rectal Smooth Muscle	rectum

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