Variant report

Variant	rs11119245
Chromosome Location	chr1:209379022-209379023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10779504	0.81[CEU][hapmap]
rs10863763	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863764	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119244	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119248	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1320543	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354849	0.83[AFR][1000 genomes]
rs1507334	0.83[AFR][1000 genomes]
rs1933601	0.82[AFR][1000 genomes]
rs1933616	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788160	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4314884	0.85[AMR][1000 genomes]
rs4844466	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6674807	0.82[AFR][1000 genomes]
rs6693967	0.82[AFR][1000 genomes]
rs7550487	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209370400-209380800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:209373200-209380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:209373200-209381200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:209373600-209380400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:209376800-209380400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:209377000-209380600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:209377000-209380800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:209377200-209381200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:209377400-209380800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:209377600-209380600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:209377800-209380400	Weak transcription	Brain Germinal Matrix	brain
12	chr1:209378600-209380400	Weak transcription	Fetal Stomach	stomach
13	chr1:209378800-209380200	Weak transcription	Fetal Brain Male	brain
14	chr1:209378800-209380200	Weak transcription	Fetal Brain Female	brain
15	chr1:209378800-209380400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:209379000-209380600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links