Variant report

Variant	rs11119558
Chromosome Location	chr1:210822022-210822023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10779543	0.85[ASN][1000 genomes]
rs10863847	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119559	0.97[ASN][1000 genomes]
rs12097792	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12736742	0.83[ASN][1000 genomes]
rs2078225	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34016540	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35795424	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4472816	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4951497	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4951675	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv873151	chr1:210818347-210846888	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv873152	chr1:210820285-210854815	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210795400-210822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:210801600-210823000	Weak transcription	Aorta	Aorta
3	chr1:210815200-210827000	Weak transcription	Pancreas	Pancrea
4	chr1:210818600-210822200	Enhancers	HepG2	liver
5	chr1:210819400-210827000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:210819400-210827200	Weak transcription	Brain Anterior Caudate	brain
7	chr1:210819600-210827200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:210819800-210823800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:210820000-210827200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:210820600-210827000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:210820800-210823000	Enhancers	Brain Germinal Matrix	brain
12	chr1:210820800-210823200	Enhancers	Fetal Brain Male	brain
13	chr1:210821000-210827200	Weak transcription	Ovary	ovary
14	chr1:210821400-210823400	Enhancers	Fetal Brain Female	brain
15	chr1:210821400-210827200	Weak transcription	Right Ventricle	heart
16	chr1:210821400-210837000	Weak transcription	Left Ventricle	heart
17	chr1:210821600-210827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:210821600-210827200	Weak transcription	HSMMtube	muscle
19	chr1:210821800-210823600	Weak transcription	Fetal Muscle Leg	muscle
20	chr1:210821800-210823600	Weak transcription	Fetal Stomach	stomach
21	chr1:210821800-210827000	Weak transcription	NHLF	lung
22	chr1:210821800-210827200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:210821800-210827200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr1:210821800-210827200	Weak transcription	HSMM	muscle
25	chr1:210822000-210822400	Weak transcription	Fetal Lung	lung
26	chr1:210822000-210827200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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