Variant report

Variant	rs11119857
Chromosome Location	chr1:212329952-212329953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11119854	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119855	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11119856	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119858	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119861	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11579154	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35941522	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4951438	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951439	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61830778	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7528369	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545650	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs982091	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999738	chr1:212218618-212513690	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212309000-212347200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:212314400-212332200	Weak transcription	Dnd41	blood
3	chr1:212320400-212332400	Weak transcription	Gastric	stomach
4	chr1:212321200-212330800	Weak transcription	Fetal Thymus	thymus
5	chr1:212323600-212335800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:212324600-212340400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:212326000-212332400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:212326000-212332400	Weak transcription	Right Ventricle	heart
9	chr1:212326400-212332400	Weak transcription	Left Ventricle	heart
10	chr1:212326400-212335000	Weak transcription	Small Intestine	intestine
11	chr1:212326600-212332200	Weak transcription	Lung	lung
12	chr1:212326800-212330200	Weak transcription	Colonic Mucosa	Colon
13	chr1:212327200-212332200	Weak transcription	Stomach Mucosa	stomach
14	chr1:212327200-212332400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:212327600-212332200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:212328400-212334600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:212329200-212330200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:212329200-212330200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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