Variant report

Variant	rs11120467
Chromosome Location	chr1:215195935-215195936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12087419	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088528	1.00[MKK][hapmap]
rs9661051	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215177200-215211200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:215195200-215196200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:215195200-215197600	Enhancers	NHLF	lung
4	chr1:215195600-215196000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:215195600-215196200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:215195600-215197000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:215195600-215197400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:215195600-215197800	Enhancers	Adipose Nuclei	Adipose
9	chr1:215195600-215197800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:215195800-215196000	Flanking Active TSS	Liver	Liver
11	chr1:215195800-215196000	Flanking Active TSS	Osteobl	bone
12	chr1:215195800-215196200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:215195800-215196400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:215195800-215196800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:215195800-215197000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:215195800-215197000	Flanking Active TSS	NHDF-Ad	bronchial
17	chr1:215195800-215198200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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