Variant report

Variant	rs11120655
Chromosome Location	chr1:216007911-216007912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11120656	0.94[AFR][1000 genomes]
rs11120657	0.94[AFR][1000 genomes]
rs11120658	0.94[AFR][1000 genomes]
rs11120661	0.94[AFR][1000 genomes]
rs11120663	0.94[AFR][1000 genomes]
rs12064905	1.00[AFR][1000 genomes]
rs12092518	0.85[AFR][1000 genomes]
rs12096218	0.88[AFR][1000 genomes]
rs12097312	1.00[AFR][1000 genomes]
rs12097404	1.00[AFR][1000 genomes]
rs12097455	1.00[AFR][1000 genomes]
rs17025444	0.85[AFR][1000 genomes]
rs4129020	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv949671	chr1:215942740-216120815	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv549192	chr1:215967857-216034753	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1012279	chr1:215982058-216035558	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv832548	chr1:215987089-216175724	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216007200-216008000	Enhancers	NHLF	lung
2	chr1:216007200-216008200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:216007200-216009800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:216007400-216008000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:216007400-216008800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:216007400-216009800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:216007600-216008000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:216007600-216008400	Enhancers	Osteobl	bone
9	chr1:216007600-216009200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:216007800-216008000	Enhancers	NHDF-Ad	bronchial
11	chr1:216007800-216008200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:216007800-216009000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:216007800-216009200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:216007800-216009600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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