Variant report

Variant	rs11120699
Chromosome Location	chr1:216113872-216113873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10495012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10864214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes]
rs10864215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[ASN][1000 genomes]
rs11120694	0.98[ASN][1000 genomes]
rs11120697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11120698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes]
rs12034100	0.93[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap]
rs12046356	0.87[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.98[ASN][1000 genomes]
rs12091359	0.89[YRI][hapmap]
rs12562080	0.98[ASN][1000 genomes]
rs1347629	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1411385	1.00[CEU][hapmap]
rs1836937	0.83[ASN][1000 genomes]
rs1934423	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2365632	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs3845529	0.96[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3908469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[ASN][1000 genomes]
rs4100655	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4655288	0.89[YRI][hapmap]
rs4655433	0.89[YRI][hapmap]
rs4655437	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs492474	0.93[CHB][hapmap]
rs498911	0.93[CHB][hapmap]
rs513746	0.93[CHB][hapmap]
rs517577	0.94[CHB][hapmap]
rs633846	0.88[CHB][hapmap]
rs646576	0.94[CHB][hapmap]
rs647908	0.94[CHB][hapmap]
rs662355	0.94[CHB][hapmap]
rs6661521	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap]
rs6665202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6675583	0.99[ASN][1000 genomes]
rs772713	0.93[CHB][hapmap]
rs942837	0.94[CHB][hapmap]
rs942838	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949671	chr1:215942740-216120815	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832548	chr1:215987089-216175724	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv428599	chr1:216086224-216267211	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv527176	chr1:216112208-216115708	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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