Variant report

Variant	rs11123036
Chromosome Location	chr2:125091848-125091849
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1425743	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1834443	0.88[EUR][1000 genomes]
rs779982	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv874990	chr2:125038678-125099924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125085800-125093000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:125087400-125093000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:125087800-125093000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:125088200-125092600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:125088600-125092600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:125090800-125092200	Enhancers	Liver	Liver
7	chr2:125091400-125093600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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