Variant report

Variant	rs11123167
Chromosome Location	chr2:113906869-113906870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11123166	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11885498	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1374281	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2172190	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2264097	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2264098	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2902452	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs315949	0.81[CEU][hapmap]
rs315956	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62161285	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6750555	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6754298	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs895496	0.93[CEU][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv582711	chr2:113895516-113984503	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113905600-113908000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:113905800-113908000	Enhancers	NHEK	skin
3	chr2:113905800-113908200	Enhancers	HMEC	breast
4	chr2:113906200-113907400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:113906200-113907800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:113906200-113908200	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:113906400-113907200	Enhancers	Primary T cells from cord blood	blood
8	chr2:113906400-113908000	Enhancers	Primary B cells from cord blood	blood
9	chr2:113906400-113908000	Enhancers	Placenta	Placenta
10	chr2:113906600-113907800	Enhancers	HepG2	liver
11	chr2:113906600-113908000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:113906800-113907200	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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