Variant report

Variant	rs11123182
Chromosome Location	chr2:114126544-114126545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11687673	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11694836	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12995339	0.80[EUR][1000 genomes]
rs1823124	0.81[EUR][1000 genomes]
rs1867868	0.89[CEU][hapmap]
rs1867870	0.89[CEU][hapmap]
rs1968615	0.81[EUR][1000 genomes]
rs1968616	0.81[EUR][1000 genomes]
rs4439970	0.81[EUR][1000 genomes]
rs4848333	0.81[EUR][1000 genomes]
rs4848334	0.81[EUR][1000 genomes]
rs4848335	0.81[EUR][1000 genomes]
rs4849214	0.84[AMR][1000 genomes]
rs58583672	0.81[EUR][1000 genomes]
rs7604877	0.96[CEU][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757826	chr2:114074949-114253780	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759085	chr2:114074949-114428678	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1002255	chr2:114120037-114236620	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114106800-114129800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:114117000-114126600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:114117400-114126600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:114117400-114126600	Weak transcription	NHEK	skin
5	chr2:114124800-114126600	Weak transcription	HMEC	breast
6	chr2:114125000-114127200	Weak transcription	A549	lung
7	chr2:114125600-114127000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:114125800-114126800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr2:114126000-114126800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:114126200-114126800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:114126200-114128800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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