Variant report

Variant	rs111232501
Chromosome Location	chr9:102938097-102938098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STX17-5	chr9:102937460-102938338	NONHSAT133711

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv968740	chr9:102937708-102938501	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102914600-102940600	Weak transcription	HSMMtube	muscle
2	chr9:102916200-102941400	Weak transcription	HepG2	liver
3	chr9:102916400-102938200	Weak transcription	Adipose Nuclei	Adipose
4	chr9:102921200-102938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:102930600-102940000	Weak transcription	Pancreas	Pancrea
6	chr9:102931000-102941000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:102932200-102941200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:102932600-102939800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:102933400-102939000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:102933400-102942000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:102933600-102941000	Weak transcription	Spleen	Spleen
12	chr9:102934000-102939200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:102934200-102941200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:102934600-102938200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr9:102935200-102938200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
16	chr9:102935400-102939000	ZNF genes & repeats	Fetal Lung	lung
17	chr9:102935400-102939200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:102935400-102952000	Weak transcription	Small Intestine	intestine
19	chr9:102935600-102938400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:102935800-102939400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:102936200-102938400	Weak transcription	K562	blood
22	chr9:102936200-102939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:102936200-102939800	Weak transcription	Psoas Muscle	Psoas
24	chr9:102936200-102941600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:102936400-102939400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:102936400-102939400	Weak transcription	Fetal Kidney	kidney
27	chr9:102936400-102940600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:102936400-102941000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:102936400-102952600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:102936600-102939000	Weak transcription	A549	lung
31	chr9:102936600-102939000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr9:102936600-102939600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:102937000-102940000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr9:102937000-102940400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:102937200-102938200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:102937200-102938200	Strong transcription	Left Ventricle	heart
37	chr9:102937200-102939000	Weak transcription	Placenta	Placenta
38	chr9:102937200-102940400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:102937400-102938400	Strong transcription	Liver	Liver
40	chr9:102937400-102939000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:102937400-102939600	Strong transcription	Ovary	ovary
42	chr9:102937400-102939800	Weak transcription	Right Ventricle	heart
43	chr9:102937400-102940600	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr9:102937600-102938600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:102937600-102939000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:102937600-102939000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:102937800-102938200	ZNF genes & repeats	Aorta	Aorta
48	chr9:102937800-102938400	ZNF genes & repeats	Fetal Stomach	stomach
49	chr9:102937800-102938600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr9:102937800-102952000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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