Variant report

Variant	rs11123754
Chromosome Location	chr2:99433782-99433783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99430065..99431888-chr2:99433157..99434960,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10174531	0.81[CHB][hapmap];0.92[ASN][1000 genomes]
rs10175560	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10182043	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11900176	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11900524	0.80[EUR][1000 genomes]
rs12712034	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12712037	0.82[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12990579	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2276604	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs2280142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35929117	0.80[EUR][1000 genomes]
rs6542837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6714330	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739097	0.80[EUR][1000 genomes]
rs6753465	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6753879	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6755640	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73962464	0.91[ASN][1000 genomes]
rs7560696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7565614	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7565736	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7585419	0.92[YRI][hapmap]
rs885115	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99418000-99442200	Weak transcription	Stomach Mucosa	stomach
2	chr2:99423400-99439200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:99423600-99439200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:99423800-99434200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:99424000-99435600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:99424000-99438400	Weak transcription	Pancreas	Pancrea
7	chr2:99424800-99434800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:99426800-99439200	Weak transcription	Gastric	stomach
9	chr2:99427200-99439000	Weak transcription	Aorta	Aorta
10	chr2:99427400-99442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:99427600-99434000	Weak transcription	Lung	lung
12	chr2:99427600-99434800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:99427600-99437200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:99427600-99438000	Weak transcription	Fetal Intestine Large	intestine
15	chr2:99432600-99434200	Weak transcription	Right Ventricle	heart
16	chr2:99432600-99434600	Weak transcription	Esophagus	oesophagus
17	chr2:99432600-99435200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:99432600-99436400	Weak transcription	Fetal Intestine Small	intestine
19	chr2:99432600-99437000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:99433200-99434600	Weak transcription	Left Ventricle	heart
21	chr2:99433200-99434600	Weak transcription	Right Atrium	heart
22	chr2:99433400-99438200	Weak transcription	Colonic Mucosa	Colon

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