Variant report

Variant	rs11124239
Chromosome Location	chr2:31322910-31322911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:31321179..31323950-chr2:31325579..31327165,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10175305	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10188244	0.86[EUR][1000 genomes]
rs10189705	0.80[EUR][1000 genomes]
rs10205657	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1075688	0.89[EUR][1000 genomes]
rs1075689	0.85[EUR][1000 genomes]
rs11124240	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11674713	0.80[EUR][1000 genomes]
rs11686425	0.88[EUR][1000 genomes]
rs11692265	0.88[EUR][1000 genomes]
rs11888670	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471972	0.80[EUR][1000 genomes]
rs12712310	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12712311	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12996218	0.87[EUR][1000 genomes]
rs13003016	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029054	0.87[EUR][1000 genomes]
rs1862975	0.86[EUR][1000 genomes]
rs1862977	0.91[EUR][1000 genomes]
rs1862978	0.91[EUR][1000 genomes]
rs1862979	0.88[EUR][1000 genomes]
rs1862981	0.80[EUR][1000 genomes]
rs1991103	0.91[EUR][1000 genomes]
rs1991104	0.88[EUR][1000 genomes]
rs2098787	0.82[EUR][1000 genomes]
rs2161832	0.87[EUR][1000 genomes]
rs2161833	0.87[EUR][1000 genomes]
rs2194467	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2194468	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2194469	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2365192	0.88[EUR][1000 genomes]
rs2365196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2365197	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2365199	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2365200	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2365201	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2365205	0.86[EUR][1000 genomes]
rs2365206	0.86[EUR][1000 genomes]
rs35285211	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4951965	0.84[EUR][1000 genomes]
rs6543598	0.85[EUR][1000 genomes]
rs6543599	0.88[EUR][1000 genomes]
rs6543600	0.90[EUR][1000 genomes]
rs6709814	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6713789	0.84[EUR][1000 genomes]
rs6718085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722828	0.85[EUR][1000 genomes]
rs6729079	0.87[EUR][1000 genomes]
rs6732067	0.88[EUR][1000 genomes]
rs6743541	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6753457	0.83[EUR][1000 genomes]
rs6760532	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6760971	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7565689	0.86[EUR][1000 genomes]
rs7583033	0.87[EUR][1000 genomes]
rs7583218	0.87[EUR][1000 genomes]
rs7586148	0.81[EUR][1000 genomes]
rs7600547	0.87[EUR][1000 genomes]
rs9973425	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31302600-31325200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:31307400-31331600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:31310600-31346800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:31320600-31337800	Weak transcription	Primary B cells from cord blood	blood
5	chr2:31321000-31330800	Weak transcription	Psoas Muscle	Psoas
6	chr2:31321400-31332000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:31321600-31330400	Weak transcription	NHEK	skin

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