Variant report

Variant	rs11124531
Chromosome Location	chr2:36928650-36928651
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36928051..36929243-chr2:36997518..36998542,3	MCF-7	breast:
2	chr2:36928366..36930832-chr2:36932347..36935302,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10490667	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12472756	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12616307	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619567	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17019472	0.88[ASN][1000 genomes]
rs17019511	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62132517	0.88[ASN][1000 genomes]
rs6730333	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs759426	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv873878	chr2:36908661-36942266	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1794298	chr2:36924040-36929933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36924800-36928800	Weak transcription	NHLF	lung
2	chr2:36925200-36930600	Weak transcription	A549	lung
3	chr2:36925200-36931400	Weak transcription	HSMMtube	muscle
4	chr2:36925600-36932600	Weak transcription	Right Atrium	heart
5	chr2:36925800-36929000	Weak transcription	Ovary	ovary
6	chr2:36925800-36931000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:36925800-36931400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:36925800-36931600	Weak transcription	Osteobl	bone
9	chr2:36926600-36929200	Weak transcription	Esophagus	oesophagus
10	chr2:36926600-36930000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:36926600-36931400	Weak transcription	NHDF-Ad	bronchial
12	chr2:36927000-36931600	Weak transcription	Adipose Nuclei	Adipose
13	chr2:36927200-36929200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:36927200-36932400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:36927200-36932400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:36927600-36929800	Enhancers	Placenta	Placenta
17	chr2:36927600-36930200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:36927600-36930200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr2:36927600-36931400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:36928000-36930000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:36928200-36928800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:36928200-36928800	Flanking Active TSS	NHEK	skin
23	chr2:36928200-36929200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr2:36928200-36929400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr2:36928200-36930000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:36928400-36928800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr2:36928400-36928800	Flanking Active TSS	HMEC	breast
28	chr2:36928400-36928800	Enhancers	HUVEC	blood vessel
29	chr2:36928400-36929000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr2:36928400-36929000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:36928400-36929200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:36928400-36929200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr2:36928400-36929200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr2:36928400-36929200	Enhancers	NH-A	brain
35	chr2:36928400-36929400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr2:36928400-36929400	Enhancers	Fetal Lung	lung
37	chr2:36928400-36929800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr2:36928600-36929000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:36928600-36929000	Enhancers	Hela-S3	cervix
40	chr2:36928600-36929200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links