Variant report

Variant	rs11125086
Chromosome Location	chr2:46889996-46889997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:46883898..46887037-chr2:46888701..46892071,3	K562	blood:
2	chr2:46880745..46883271-chr2:46889135..46890937,2	MCF-7	breast:
3	chr2:46886567..46889268-chr2:46889432..46892855,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4952838	0.88[ASN][1000 genomes]
rs4953403	0.97[ASN][1000 genomes]
rs4953404	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4953406	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4953407	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6741114	0.87[ASN][1000 genomes]
rs68021574	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1009735	chr2:46724523-46913152	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv533112	chr2:46800828-46959977	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
7	nsv873997	chr2:46821640-46984627	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46870000-46891000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:46884200-46890000	Weak transcription	Right Atrium	heart
3	chr2:46884200-46891000	Weak transcription	Pancreas	Pancrea
4	chr2:46884400-46896400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:46884600-46890000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:46884600-46890000	Weak transcription	Right Ventricle	heart
7	chr2:46884800-46892600	Weak transcription	A549	lung
8	chr2:46885200-46893000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:46888600-46890000	Weak transcription	Psoas Muscle	Psoas
10	chr2:46888800-46891600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:46889000-46896800	Enhancers	Fetal Muscle Leg	muscle
12	chr2:46889200-46890000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:46889200-46896400	Enhancers	Colon Smooth Muscle	Colon
14	chr2:46889400-46890200	Enhancers	Fetal Kidney	kidney
15	chr2:46889400-46890800	Enhancers	HSMM	muscle
16	chr2:46889400-46891200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:46889400-46891400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr2:46889400-46891600	Enhancers	Ovary	ovary
19	chr2:46889400-46891800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr2:46889600-46890200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr2:46889600-46890200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:46889600-46890200	Enhancers	Esophagus	oesophagus
23	chr2:46889600-46890200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr2:46889600-46890400	Flanking Active TSS	Rectal Smooth Muscle	rectum
25	chr2:46889600-46890600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:46889600-46890600	Enhancers	NHEK	skin
27	chr2:46889600-46890800	Enhancers	NHDF-Ad	bronchial
28	chr2:46889600-46891000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr2:46889600-46891200	Enhancers	HSMMtube	muscle
30	chr2:46889600-46891800	Enhancers	Fetal Heart	heart
31	chr2:46889600-46891800	Enhancers	Fetal Muscle Trunk	muscle
32	chr2:46889600-46898200	Enhancers	Fetal Stomach	stomach
33	chr2:46889800-46890000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:46889800-46890200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr2:46889800-46890200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:46889800-46890200	Active TSS	Aorta	Aorta
37	chr2:46889800-46890200	Enhancers	Brain Germinal Matrix	brain
38	chr2:46889800-46890400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:46889800-46890400	Enhancers	Fetal Lung	lung
40	chr2:46889800-46890400	Flanking Active TSS	Osteobl	bone
41	chr2:46889800-46891200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:46889800-46891800	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links