Variant report

Variant	rs11127039
Chromosome Location	chr2:86665508-86665509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11687775	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11883727	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11894098	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11897930	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55647305	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56184319	0.83[EUR][1000 genomes]
rs6755535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67847575	0.82[EUR][1000 genomes]
rs67897621	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72930333	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72932325	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7559738	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7598175	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7600791	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86664400-86665800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:86665400-86667800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:86665400-86667800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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