Variant report

Variant	rs11129985
Chromosome Location	chr3:42944201-42944202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1975927	1.00[ASW][hapmap]
rs339670	1.00[ASW][hapmap]
rs4683343	0.87[YRI][hapmap]
rs483765	1.00[ASW][hapmap]
rs513065	1.00[ASW][hapmap]
rs535994	1.00[ASW][hapmap]
rs552472	1.00[ASW][hapmap]
rs9865715	1.00[ASW][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42940000-42944400	Enhancers	Stomach Mucosa	stomach
2	chr3:42941800-42947400	Weak transcription	Esophagus	oesophagus
3	chr3:42942600-42947600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:42942800-42947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:42944000-42947000	Weak transcription	Placenta	Placenta
6	chr3:42944000-42947000	Weak transcription	Gastric	stomach
7	chr3:42944000-42947000	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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