Variant report

Variant	rs11129992
Chromosome Location	chr3:43168768-43168769
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1072822	0.84[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12233614	0.83[ASN][1000 genomes]
rs12487785	0.84[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs12497427	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1523126	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs17391761	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1815070	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1949582	0.86[YRI][hapmap]
rs4682870	0.91[YRI][hapmap]
rs488069	0.89[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs55819365	0.83[ASN][1000 genomes]
rs604033	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43167800-43170400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:43168200-43169600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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