Variant report

Variant	rs11130751
Chromosome Location	chr3:60018915-60018916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11711227	0.85[CEU][hapmap]
rs11716199	0.83[ASN][1000 genomes]
rs11718208	0.85[CEU][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11718957	0.86[AMR][1000 genomes]
rs11720431	0.85[AMR][1000 genomes]
rs13062399	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13063836	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13075738	0.83[AMR][1000 genomes]
rs13081934	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088111	0.85[CEU][hapmap]
rs169841	0.82[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs17322850	0.85[CEU][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs212042	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs212043	0.82[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs212044	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs212045	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs212061	0.82[MEX][hapmap]
rs35122656	0.83[AMR][1000 genomes]
rs3845972	0.82[CHB][hapmap]
rs3845973	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3856663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3856664	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3856665	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3912495	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4327338	0.80[AMR][1000 genomes]
rs60458864	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62238444	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11130751	FEZF2	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60003800-60021200	Weak transcription	Thymus	Thymus
2	chr3:60013400-60022600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr3:60016000-60021600	Weak transcription	Dnd41	blood
4	chr3:60017000-60019600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:60017200-60022800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:60017400-60019800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:60017400-60019800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:60018000-60019800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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