Variant report

Variant	rs11131325
Chromosome Location	chr4:62240747-62240748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10866117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1456860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1456861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2045363	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2124793	0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2342717	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs28414724	0.83[ASN][1000 genomes]
rs4860092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4860411	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6824929	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9684550	0.91[ASN][1000 genomes]
rs9999447	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62239400-62241000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:62239400-62241000	Enhancers	Hela-S3	cervix
3	chr4:62239400-62241400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:62239400-62241400	Enhancers	HSMM	muscle
5	chr4:62239400-62241600	Enhancers	NHEK	skin
6	chr4:62239600-62241000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:62239600-62241000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:62239600-62241000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:62239600-62241200	Enhancers	Fetal Lung	lung
10	chr4:62239600-62243000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:62239800-62240800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:62239800-62240800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:62239800-62240800	Enhancers	Brain Anterior Caudate	brain
14	chr4:62239800-62241400	Enhancers	HMEC	breast
15	chr4:62239800-62241600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:62240000-62240800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:62240000-62240800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:62240000-62240800	Active TSS	Aorta	Aorta
19	chr4:62240000-62241000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr4:62240200-62240800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr4:62240200-62240800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr4:62240200-62241000	Enhancers	Fetal Stomach	stomach
23	chr4:62240200-62241400	Enhancers	NH-A	brain
24	chr4:62240200-62241800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:62240400-62241600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr4:62240400-62242000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr4:62240400-62242600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:62240600-62241000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:62240600-62241600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr4:62240600-62242200	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:62240600-62242600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr4:62240600-62243000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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