Variant report

Variant	rs11132341
Chromosome Location	chr4:186644122-186644123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:186642780..186645447-chr4:186647072..186650843,3	MCF-7	breast:
2	chr4:186642283..186645621-chr4:186649150..186653147,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11723622	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11725118	0.89[EUR][1000 genomes]
rs11725143	0.90[EUR][1000 genomes]
rs11731079	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11735888	0.83[ASN][1000 genomes]
rs11736488	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931896	0.92[CEU][hapmap]
rs12646619	0.91[EUR][1000 genomes]
rs12650192	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56341407	0.91[EUR][1000 genomes]
rs62334776	0.84[ASN][1000 genomes]
rs62334780	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62334783	0.93[EUR][1000 genomes]
rs6825881	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1020731	chr4:186512433-186724031	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1023412	chr4:186613289-186707428	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv537421	chr4:186613289-186707428	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186622000-186651800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:186630000-186651600	Weak transcription	HSMM	muscle
3	chr4:186634400-186645200	Enhancers	Liver	Liver
4	chr4:186634400-186651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:186638000-186645000	Weak transcription	Right Atrium	heart
6	chr4:186638400-186648200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:186638400-186648200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:186638600-186651600	Weak transcription	Psoas Muscle	Psoas
9	chr4:186639000-186651000	Enhancers	Fetal Heart	heart
10	chr4:186639600-186645800	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:186640800-186653600	Weak transcription	Fetal Intestine Large	intestine
12	chr4:186641000-186645400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:186641400-186647200	Weak transcription	Aorta	Aorta
14	chr4:186641400-186651600	Weak transcription	Right Ventricle	heart
15	chr4:186641600-186646800	Enhancers	Fetal Stomach	stomach
16	chr4:186641800-186648200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:186642000-186646000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:186642200-186644400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:186642200-186651600	Weak transcription	Spleen	Spleen
20	chr4:186642400-186645400	Enhancers	Stomach Mucosa	stomach
21	chr4:186642600-186644400	Weak transcription	Ovary	ovary
22	chr4:186642600-186644600	Enhancers	Fetal Lung	lung
23	chr4:186642800-186645600	Weak transcription	Left Ventricle	heart
24	chr4:186642800-186651600	Weak transcription	Lung	lung
25	chr4:186642800-186657800	Weak transcription	Gastric	stomach
26	chr4:186643000-186644600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:186643000-186644800	Enhancers	Hela-S3	cervix
28	chr4:186643000-186645200	Enhancers	HepG2	liver
29	chr4:186643000-186648000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:186643000-186648200	Weak transcription	Brain Anterior Caudate	brain
31	chr4:186643000-186649200	Weak transcription	Pancreas	Pancrea
32	chr4:186643000-186651600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:186643000-186654000	Weak transcription	Fetal Intestine Small	intestine
34	chr4:186643200-186645000	Weak transcription	Adipose Nuclei	Adipose
35	chr4:186643200-186645000	Enhancers	Colon Smooth Muscle	Colon
36	chr4:186643400-186644200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:186643400-186644600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:186643400-186644600	Weak transcription	Fetal Kidney	kidney
39	chr4:186643400-186644600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr4:186643400-186648000	Weak transcription	HSMMtube	muscle
41	chr4:186643400-186651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:186643600-186648000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:186643600-186650400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:186643800-186644600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:186643800-186648200	Weak transcription	Fetal Brain Male	brain
46	chr4:186643800-186650600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:186643800-186657800	Weak transcription	Fetal Brain Female	brain
48	chr4:186644000-186644800	Enhancers	Small Intestine	intestine
49	chr4:186644000-186645800	Enhancers	HUVEC	blood vessel

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