Variant report

Variant	rs11133309
Chromosome Location	chr4:55037174-55037175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1017280	0.88[AFR][1000 genomes]
rs11725470	0.88[AFR][1000 genomes]
rs12507253	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12510014	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12512002	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13112338	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131948	0.88[AFR][1000 genomes]
rs13145280	0.88[ASN][1000 genomes]
rs13148062	0.88[AFR][1000 genomes]
rs34797391	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35422368	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35511042	0.88[AFR][1000 genomes]
rs36035401	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811249	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71597863	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71597864	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71597865	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7659453	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7676108	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677077	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677087	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929967	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929968	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9994577	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv879020	chr4:54986912-55064573	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv523058	chr4:55018617-55045716	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55032400-55039600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:55033000-55037800	Weak transcription	HSMM	muscle
3	chr4:55036800-55037800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:55037000-55037200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:55037000-55038800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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