Variant report

Variant	rs11133487
Chromosome Location	chr4:58002616-58002617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10024901	0.85[EUR][1000 genomes]
rs6817778	0.97[EUR][1000 genomes]
rs6831234	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6832199	0.85[EUR][1000 genomes]
rs6833847	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9992658	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1010053	chr4:57978944-58331324	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv594207	chr4:57987433-58098554	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:58002000-58003000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:58002000-58004000	Enhancers	HMEC	breast
3	chr4:58002200-58002800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:58002200-58003000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:58002200-58003400	Enhancers	NHEK	skin
6	chr4:58002200-58004000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:58002400-58003000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:58002400-58003000	Enhancers	HSMMtube	muscle
9	chr4:58002400-58003600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:58002400-58003800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:58002400-58003800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:58002400-58003800	Enhancers	HUVEC	blood vessel
13	chr4:58002400-58003800	Enhancers	NH-A	brain
14	chr4:58002400-58003800	Enhancers	Osteobl	bone
15	chr4:58002600-58002800	Enhancers	HSMM	muscle
16	chr4:58002600-58003200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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