Variant report

Variant	rs11135435
Chromosome Location	chr5:95152823-95152824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95148182..95149810-chr5:95152162..95154421,2	MCF-7	breast:
2	chr5:95151960..95154634-chr5:95154994..95157886,2	K562	blood:
3	chr5:95152689..95154883-chr5:95158180..95160300,2	K562	blood:
4	chr5:95149457..95151084-chr5:95151205..95153172,2	K562	blood:

Variant related genes	Relation type
ENSG00000173221	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6877979	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv462255	chr5:95142817-95168155	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv598961	chr5:95142817-95168155	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv882389	chr5:95144952-95173887	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95115400-95157000	Weak transcription	Aorta	Aorta
2	chr5:95121000-95156800	Weak transcription	Brain Germinal Matrix	brain
3	chr5:95124600-95154400	Weak transcription	Brain Angular Gyrus	brain
4	chr5:95125000-95154400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:95130000-95157400	Weak transcription	Ovary	ovary
6	chr5:95139800-95154200	Weak transcription	Pancreas	Pancrea
7	chr5:95143200-95153600	Genic enhancers	Fetal Thymus	thymus
8	chr5:95145600-95153200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:95145600-95154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:95145600-95154400	Weak transcription	Esophagus	oesophagus
11	chr5:95146000-95157200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:95146600-95153000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:95146600-95153800	Weak transcription	Brain Substantia Nigra	brain
14	chr5:95146800-95153200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:95146800-95157000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:95147000-95153400	Weak transcription	NHDF-Ad	bronchial
17	chr5:95148200-95153000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:95148200-95153000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:95148200-95153000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:95148200-95153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:95148200-95153000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:95148200-95153000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr5:95148200-95153000	Weak transcription	Right Atrium	heart
24	chr5:95148200-95153200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:95148200-95153400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr5:95148200-95153800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:95148200-95154400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:95148200-95156800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:95148200-95157800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:95148400-95154000	Weak transcription	A549	lung
31	chr5:95148400-95156400	Weak transcription	Fetal Brain Male	brain
32	chr5:95148400-95156800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr5:95148600-95153000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:95149000-95153000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:95149400-95153000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:95149400-95153000	Weak transcription	Fetal Heart	heart
37	chr5:95149600-95154000	Weak transcription	Fetal Brain Female	brain
38	chr5:95149800-95153000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:95149800-95153200	Strong transcription	NHLF	lung
40	chr5:95150000-95153000	Genic enhancers	Primary monocytes fromperipheralblood	blood
41	chr5:95150000-95153000	Genic enhancers	HSMMtube	muscle
42	chr5:95150200-95153000	Genic enhancers	Thymus	Thymus
43	chr5:95150200-95153200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:95150200-95153200	Genic enhancers	Dnd41	blood
45	chr5:95150200-95154000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr5:95150400-95153000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr5:95150400-95153400	Strong transcription	Hela-S3	cervix
48	chr5:95150400-95154000	Strong transcription	Fetal Stomach	stomach
49	chr5:95150600-95153000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:95150600-95153800	Genic enhancers	Liver	Liver

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