Variant report

Variant	rs111364784
Chromosome Location	chr7:19152161-19152162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC9-2	chr7:19152097-19152290	XLOC_006001
2	lnc-HDAC9-2	chr7:19152097-19152290	ENSG00000232821.1

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538767	chr7:19150355-19163170	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028132	chr7:19150355-19172107	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv538768	chr7:19150355-19172107	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538769	chr7:19150920-19160604	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv538770	chr7:19151576-19159136	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
9	nsv538771	chr7:19151576-19162140	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
10	nsv538772	chr7:19152061-19159275	Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19148200-19154800	Weak transcription	HSMMtube	muscle
2	chr7:19148400-19155600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:19148600-19152600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:19149000-19152200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:19150800-19152200	Active TSS	NHDF-Ad	bronchial
6	chr7:19150800-19153200	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr7:19150800-19157200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:19151200-19153000	Flanking Active TSS	Osteobl	bone
9	chr7:19151400-19155200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:19151600-19152400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr7:19151600-19152600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr7:19151600-19152600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:19151600-19152600	Active TSS	Aorta	Aorta
14	chr7:19151600-19152800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr7:19151600-19153400	Strong transcription	HSMM	muscle
16	chr7:19151800-19152200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr7:19151800-19152200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:19151800-19152200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr7:19151800-19152200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr7:19151800-19152200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
21	chr7:19151800-19152200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:19151800-19152200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
23	chr7:19151800-19152200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
24	chr7:19151800-19152200	Enhancers	NH-A	brain
25	chr7:19151800-19152200	Enhancers	NHLF	lung
26	chr7:19151800-19152600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:19151800-19152800	Active TSS	Right Atrium	heart
28	chr7:19151800-19153000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:19151800-19158800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:19152000-19152200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:19152000-19152200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:19152000-19152200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:19152000-19152200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:19152000-19152200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr7:19152000-19152200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:19152000-19152200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
37	chr7:19152000-19152200	Bivalent Enhancer	Brain Germinal Matrix	brain
38	chr7:19152000-19152200	Bivalent Enhancer	Esophagus	oesophagus
39	chr7:19152000-19152200	Active TSS	Placenta	Placenta
40	chr7:19152000-19152200	Bivalent Enhancer	Fetal Thymus	thymus
41	chr7:19152000-19152200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
42	chr7:19152000-19152400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
43	chr7:19152000-19152400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:19152000-19152400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
45	chr7:19152000-19152400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:19152000-19152400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
47	chr7:19152000-19152400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:19152000-19152400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
49	chr7:19152000-19152400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr7:19152000-19152400	Bivalent/Poised TSS	Left Ventricle	heart

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