Variant report

Variant	rs1113666
Chromosome Location	chr6:109579723-109579724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109578534..109581492-chr6:109583225..109585725,2	K562	blood:
2	chr6:109573600..109575785-chr6:109578513..109582228,5	K562	blood:
3	chr6:109572074..109573925-chr6:109578773..109580285,2	MCF-7	breast:
4	chr6:109574243..109576098-chr6:109577884..109580238,2	MCF-7	breast:
5	chr6:109573371..109575785-chr6:109578513..109580887,3	K562	blood:
6	chr6:109572927..109577072-chr6:109577808..109581744,6	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1040285	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1113665	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11153163	0.94[ASN][1000 genomes]
rs13216168	0.87[ASN][1000 genomes]
rs1341269	0.90[YRI][hapmap]
rs1815038	0.93[ASN][1000 genomes]
rs2090887	0.88[ASN][1000 genomes]
rs4590308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4945828	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4946951	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4946952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6919557	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9320279	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs932223	0.83[ASW][hapmap]
rs9374067	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9398190	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109574600-109583400	Weak transcription	Placenta	Placenta
7	chr6:109575200-109582800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
9	chr6:109577200-109583400	Weak transcription	Fetal Kidney	kidney
10	chr6:109577600-109581800	Weak transcription	Adipose Nuclei	Adipose
11	chr6:109577600-109583000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:109577800-109581600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:109577800-109582200	Weak transcription	Fetal Stomach	stomach
14	chr6:109578000-109582000	Weak transcription	Fetal Lung	lung
15	chr6:109578400-109579800	Enhancers	Liver	Liver
16	chr6:109578800-109580400	Enhancers	HepG2	liver
17	chr6:109579000-109579800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:109579000-109580600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:109579000-109583200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:109579400-109579800	Enhancers	Fetal Intestine Large	intestine
21	chr6:109579600-109579800	Enhancers	Fetal Intestine Small	intestine
22	chr6:109579600-109584200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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