Variant report

Variant	rs111368714
Chromosome Location	chr16:80014482-80014483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3360836	chr16:80013751-80018049	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80006400-80015000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:80013000-80014600	Weak transcription	K562	blood
3	chr16:80013200-80016200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr16:80013800-80016600	Enhancers	Brain Substantia Nigra	brain
5	chr16:80014200-80015600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr16:80014200-80016400	Enhancers	Brain Hippocampus Middle	brain
7	chr16:80014400-80016200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr16:80014400-80016400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr16:80014400-80017000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links