Variant report

Variant	rs11139727
Chromosome Location	chr9:85362958-85362959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11139728	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85350000-85364600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:85352200-85364800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:85356200-85364400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:85361600-85363200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:85361600-85363200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:85361600-85365600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:85361600-85365600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:85361800-85365400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:85362000-85363200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:85362000-85372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:85362400-85363000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:85362600-85363200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:85362800-85364400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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