Variant report

Variant	rs11140096
Chromosome Location	chr9:86066034-86066035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10119045	0.87[CHB][hapmap]
rs10780604	0.86[CHB][hapmap]
rs2375919	0.87[CHB][hapmap]
rs3860924	0.87[CHB][hapmap]
rs4877762	0.87[CHB][hapmap]
rs4877763	0.87[CHB][hapmap]
rs7022758	0.87[CHB][hapmap]
rs7023415	0.87[CHB][hapmap]
rs7037923	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11140096	FRMD3	cis	cerebellum	SCAN
rs11140096	C9orf103	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
3	chr9:86057000-86066400	Weak transcription	A549	lung
4	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
5	chr9:86061200-86081400	Weak transcription	HepG2	liver
6	chr9:86063400-86066200	Weak transcription	Colonic Mucosa	Colon
7	chr9:86064000-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:86064600-86066200	Weak transcription	Placenta	Placenta
9	chr9:86065000-86071200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:86065200-86066400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:86065800-86066200	Weak transcription	Ovary	ovary
12	chr9:86065800-86073200	Weak transcription	Spleen	Spleen
13	chr9:86065800-86078800	Weak transcription	Left Ventricle	heart
14	chr9:86066000-86066200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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