Variant report

Variant	rs11140124
Chromosome Location	chr9:86111328-86111329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10868020	0.85[EUR][1000 genomes]
rs11140115	0.85[EUR][1000 genomes]
rs11140117	0.85[EUR][1000 genomes]
rs11140118	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11140119	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140121	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12352296	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12352407	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12376872	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12380450	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12380849	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35561467	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35632982	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3860938	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60961568	0.83[ASN][1000 genomes]
rs9314717	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314718	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9314719	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86107200-86115200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:86107200-86123000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:86107600-86118600	Weak transcription	Ovary	ovary
4	chr9:86107800-86118400	Weak transcription	Left Ventricle	heart
5	chr9:86107800-86118600	Weak transcription	Right Atrium	heart
6	chr9:86108000-86120200	Weak transcription	Psoas Muscle	Psoas
7	chr9:86108000-86120200	Weak transcription	Right Ventricle	heart
8	chr9:86109000-86114400	Weak transcription	Hela-S3	cervix
9	chr9:86110800-86114400	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links