Variant report

Variant	rs11140174
Chromosome Location	chr9:86225727-86225728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10780616	0.81[EUR][1000 genomes]
rs10780619	0.80[EUR][1000 genomes]
rs10780620	0.81[EUR][1000 genomes]
rs10868034	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2282220	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3750409	0.81[EUR][1000 genomes]
rs4146740	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11140174	RP11-522I20.3	cis	Whole Blood	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86216200-86237400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:86224200-86225800	Weak transcription	Liver	Liver
3	chr9:86224800-86226600	Weak transcription	HepG2	liver
4	chr9:86225400-86225800	Weak transcription	Psoas Muscle	Psoas
5	chr9:86225600-86226200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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