Variant report

Variant	rs1114091
Chromosome Location	chr4:77144259-77144260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17235935	0.88[CEU][hapmap]
rs1911738	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4859433	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4859640	0.86[EUR][1000 genomes]
rs62303008	0.86[EUR][1000 genomes]
rs6835986	0.88[CEU][hapmap]
rs717239	0.92[CEU][hapmap]
rs7667229	0.87[EUR][1000 genomes]
rs7675593	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.86[EUR][1000 genomes]
rs7675963	1.00[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1114091	CCDC158	cis	cerebellum	SCAN
rs1114091	SHROOM3	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77135800-77147400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:77136000-77150600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:77138600-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:77139000-77146200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:77139000-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:77141000-77147400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:77142400-77144400	Weak transcription	Liver	Liver
9	chr4:77142400-77144400	Weak transcription	Fetal Intestine Small	intestine
10	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
11	chr4:77144200-77146000	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links