Variant report

Variant	rs111410834
Chromosome Location	chr4:132643966-132643967
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:132643925-132643975	SK-N-MC	brain:	n/a
2	chr4:132643925-132643975	AG10803	skin:	n/a
3	chr4:132643925-132643975	AoSMC	blood vessel:	n/a
4	chr4:132643925-132643975	HCF	heart:	n/a
5	chr4:132643925-132643975	NH-A	brain:	n/a
6	chr4:132643925-132643975	MCF10A-Er-Src	breast:	n/a
7	chr4:132643925-132643975	HNPCEpiC	eye:	n/a
8	chr4:132643925-132643975	HEEpiC	esophagus:	n/a
9	chr4:132643925-132643975	NB4	blood:	n/a
10	chr4:132643925-132643975	BE2_C	brain:	n/a
11	chr4:132643925-132643975	HRPEpiC	eye:	n/a
12	chr4:132643925-132643975	HRCEpiC	kidney:	n/a
13	chr4:132643925-132643975	HUVEC	blood vessel:	n/a
14	chr4:132643925-132643975	HIPEpiC	eye:	n/a
15	chr4:132643925-132643975	IMR90	lung:	fetal
16	chr4:132643925-132643975	HRE	kidney:	n/a
17	chr4:132643925-132643975	Caco-2	colon:	n/a
18	chr4:132643925-132643975	NHBE	bronchial:	n/a
19	chr4:132643925-132643975	NHDF-neo	bronchial:	n/a
20	chr4:132643925-132643975	U87	brain:	n/a
21	chr4:132643925-132643975	AG09309	skin:	n/a
22	chr4:132643925-132643975	LNCaP	prostate:	n/a
23	chr4:132643925-132643975	A549	lung:	n/a
24	chr4:132643925-132643975	H1-hESC	embryonic stem cell:	embryo
25	chr4:132643925-132643975	CMK	blood:	n/a
26	chr4:132643925-132643975	Hela-S3	cervix:	n/a
27	chr4:132643925-132643975	Hepatocyte	liver:	n/a
28	chr4:132643925-132643975	GM12878	blood:	n/a
29	chr4:132643925-132643975	HPAEpiC	pulmonary alveolar:	n/a
30	chr4:132643925-132643975	K562	blood:	n/a
31	chr4:132643925-132643975	HMEC	breast:	n/a
32	chr4:132643925-132643975	AG04449	skin:	fetal
33	chr4:132643925-132643975	HL-60	blood:	n/a
34	chr4:132643925-132643975	MCF-7	breast:	n/a
35	chr4:132643925-132643975	ProgFib	skin:	n/a
36	chr4:132643925-132643975	GM06990	blood:	n/a
37	chr4:132643925-132643975	HAEpiC	amniotic membrane:	n/a
38	chr4:132643925-132643975	HCPEpiC	choroid plexus:	n/a
39	chr4:132643925-132643975	AG04450	lung:	fetal
40	chr4:132643925-132643975	GM19239	blood:	n/a
41	chr4:132643925-132643975	ECC-1	luminal epithelium:	n/a
42	chr4:132643925-132643975	T-47D	breast:	n/a
43	chr4:132643925-132643975	SKMC	muscle:	n/a
44	chr4:132643925-132643975	AG09319	gingival:	n/a
45	chr4:132643925-132643975	HEK293	kidney:	embryo
46	chr4:132643925-132643975	BJ	skin:	n/a
47	chr4:132643925-132643975	GM12892	blood:	n/a
48	chr4:132643925-132643975	Jurkat	blood:	n/a
49	chr4:132643925-132643975	PrEC	prostate:	n/a
50	chr4:132643925-132643975	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
RN7SL205P	CpG island

Extended variants
information (count: 37 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533069	chr4:132266740-132906467	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv427695	chr4:132369789-132930726	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv879978	chr4:132553385-132649577	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv19423	chr4:132558697-132899638	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1806509	chr4:132569215-132903485	Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1811989	chr4:132574098-132902027	Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1807680	chr4:132577148-132902227	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv10567	chr4:132577264-132644285	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv830068	chr4:132580776-132800497	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv10792	chr4:132581305-132685860	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv10755	chr4:132581408-132644295	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv821123	chr4:132581408-132644295	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1815795	chr4:132581771-132773067	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv1812383	chr4:132585798-132903485	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv1798694	chr4:132592476-132887605	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
16	esv1804660	chr4:132592512-132902227	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
17	esv1811099	chr4:132592712-132902027	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv428450	chr4:132597437-132930726	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv879979	chr4:132600769-132757887	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv879980	chr4:132613114-132687177	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv879981	chr4:132613114-132816821	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv879982	chr4:132631628-132687177	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv879983	chr4:132631628-132689843	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv879984	chr4:132631628-132757887	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv508312	chr4:132638704-132700532	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv966320	chr4:132640081-132687345	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
27	nsv879985	chr4:132640243-132689843	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
28	nsv879986	chr4:132640243-132716060	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
29	nsv879987	chr4:132640243-132757887	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
30	esv1828363	chr4:132641191-132687015	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv10568	chr4:132641874-132895723	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv4510	chr4:132642264-132689727	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
33	esv3422985	chr4:132642402-132649700	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
34	esv3394238	chr4:132643202-132646800	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
35	esv3354147	chr4:132643202-132646900	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
36	esv3428562	chr4:132643202-132646900	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
37	esv3342552	chr4:132643807-132647277	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:132643200-132644000	Enhancers	GM12878-XiMat	blood
2	chr4:132643600-132644000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:132643800-132646000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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