Variant report

Variant	rs11141180
Chromosome Location	chr9:71013409-71013410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10868322	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11141451	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12352908	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12554251	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28412750	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28422790	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3912907	0.81[EUR][1000 genomes]
rs4509404	0.82[EUR][1000 genomes]
rs59591874	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs638675	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70982400-71015000	Weak transcription	Fetal Heart	heart
2	chr9:70982400-71031200	Weak transcription	Fetal Lung	lung
3	chr9:70987800-71031800	Weak transcription	Fetal Stomach	stomach
4	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
5	chr9:70999000-71031800	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:70999400-71019400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:71000200-71016200	Weak transcription	Ovary	ovary
8	chr9:71000600-71015000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:71004600-71027200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:71007000-71031000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:71007600-71019200	Weak transcription	Left Ventricle	heart
12	chr9:71007600-71022600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:71007600-71032000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:71012600-71013600	Weak transcription	NHLF	lung
15	chr9:71013200-71013800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:71013400-71013800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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