Variant report

Variant	rs11142486
Chromosome Location	chr9:73171202-73171203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73170241..73173099-chr9:73173293..73176784,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61576973	1.00[EUR][1000 genomes]
rs73465672	1.00[EUR][1000 genomes]
rs73465867	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73165800-73176200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:73165800-73176200	Weak transcription	Small Intestine	intestine
4	chr9:73166400-73171800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:73169800-73172000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:73169800-73175600	Weak transcription	Fetal Lung	lung
7	chr9:73170000-73189000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:73170200-73171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:73170200-73176600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:73170200-73178400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:73170200-73181200	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:73170400-73171600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:73170400-73172000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:73170400-73177800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:73170600-73171400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:73170600-73172600	Weak transcription	Lung	lung
17	chr9:73170600-73179200	Weak transcription	Brain Substantia Nigra	brain
18	chr9:73170800-73188400	Weak transcription	Right Atrium	heart
19	chr9:73171000-73176200	Weak transcription	Adipose Nuclei	Adipose
20	chr9:73171200-73172400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:73171200-73172400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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