Variant report

Variant	rs11142599
Chromosome Location	chr9:73409598-73409599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11142595	0.87[ASN][1000 genomes]
rs17555916	0.87[ASN][1000 genomes]
rs2152757	0.87[ASN][1000 genomes]
rs7875338	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73396800-73417800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:73399000-73410400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:73406000-73415800	Weak transcription	Fetal Kidney	kidney
4	chr9:73407400-73410600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:73407400-73417400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:73407400-73421000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:73407400-73421000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:73407400-73427000	Weak transcription	Aorta	Aorta
9	chr9:73409200-73409800	Enhancers	Fetal Brain Male	brain
10	chr9:73409400-73409600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:73409400-73409600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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