Variant report

Variant	rs11142714
Chromosome Location	chr9:71131098-71131099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10120745	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10123848	1.00[YRI][hapmap]
rs10124105	0.84[AFR][1000 genomes]
rs11142713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341862	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12348463	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12349403	0.84[AFR][1000 genomes]
rs12351373	1.00[YRI][hapmap]
rs12552415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187844	1.00[YRI][hapmap]
rs1928255	1.00[YRI][hapmap]
rs2860101	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs28685588	0.84[AFR][1000 genomes]
rs398222	0.85[CEU][hapmap]
rs41305537	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41312182	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714401	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72716004	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71117600-71142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:71122200-71133200	Weak transcription	Ovary	ovary
3	chr9:71122400-71132000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:71122600-71132400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:71124800-71133200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:71127400-71132800	Weak transcription	Fetal Lung	lung
7	chr9:71127400-71132800	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:71128400-71131600	Enhancers	Right Ventricle	heart
9	chr9:71128400-71131600	Enhancers	Hela-S3	cervix
10	chr9:71129000-71131400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr9:71129000-71131400	Enhancers	Right Atrium	heart
12	chr9:71129000-71131800	Enhancers	Placenta	Placenta
13	chr9:71129800-71131200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr9:71129800-71132800	Weak transcription	Psoas Muscle	Psoas
15	chr9:71130200-71131800	Strong transcription	Fetal Stomach	stomach
16	chr9:71130200-71148000	Weak transcription	HSMMtube	muscle
17	chr9:71130400-71131200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr9:71130400-71131200	Weak transcription	Gastric	stomach
19	chr9:71130400-71131600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
20	chr9:71130400-71131600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
21	chr9:71130400-71132800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:71130600-71131600	Enhancers	Stomach Mucosa	stomach
23	chr9:71130600-71132000	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:71130600-71132800	Weak transcription	Aorta	Aorta
25	chr9:71130600-71144400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr9:71130600-71144800	Weak transcription	Left Ventricle	heart
27	chr9:71130800-71131200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
28	chr9:71130800-71131400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr9:71130800-71131400	Weak transcription	Fetal Intestine Small	intestine
30	chr9:71130800-71145400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:71131000-71131800	Strong transcription	Stomach Smooth Muscle	stomach
32	chr9:71131000-71152600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links