Variant report

Variant	rs11143568
Chromosome Location	chr9:71346288-71346289
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71345141..71347064-chr9:71360683..71362254,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10217316	0.80[EUR][1000 genomes]
rs10781119	0.83[EUR][1000 genomes]
rs2151417	0.83[EUR][1000 genomes]
rs2184117	0.81[EUR][1000 genomes]
rs4744680	0.85[EUR][1000 genomes]
rs4745230	0.81[EUR][1000 genomes]
rs6560316	0.82[EUR][1000 genomes]
rs7021661	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv2757339	chr9:71291107-71353743	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759693	chr9:71291107-71353743	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71322000-71349400	Weak transcription	Aorta	Aorta
2	chr9:71324400-71346400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:71336600-71346400	Weak transcription	Left Ventricle	heart
4	chr9:71337000-71350600	Weak transcription	Gastric	stomach
5	chr9:71342600-71347400	Strong transcription	Primary B cells from cord blood	blood
6	chr9:71342600-71354600	Enhancers	Fetal Intestine Large	intestine
7	chr9:71343400-71363000	Weak transcription	GM12878-XiMat	blood
8	chr9:71343800-71347800	Weak transcription	Right Atrium	heart
9	chr9:71343800-71357200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr9:71344600-71354000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:71344800-71350400	Enhancers	Fetal Intestine Small	intestine
12	chr9:71345400-71350200	Enhancers	Stomach Mucosa	stomach
13	chr9:71345400-71350800	Weak transcription	Colonic Mucosa	Colon
14	chr9:71345600-71352800	Enhancers	Fetal Heart	heart
15	chr9:71345800-71347000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr9:71346000-71346600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:71346000-71346600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr9:71346000-71346600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr9:71346000-71346800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:71346000-71347000	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr9:71346000-71347200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:71346000-71347200	Enhancers	K562	blood
23	chr9:71346200-71346600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:71346200-71346600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:71346200-71346600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr9:71346200-71346800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:71346200-71346800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr9:71346200-71346800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:71346200-71347400	Flanking Active TSS	HepG2	liver
30	chr9:71346200-71348200	Enhancers	Small Intestine	intestine

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