Variant report

Variant	rs11144924
Chromosome Location	chr9:79101090-79101091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79099514..79101931-chr9:79127814..79129631,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10781364	0.80[AMR][1000 genomes]
rs10869783	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11144925	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13296851	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1547139	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1547140	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744788	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4745555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4745556	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5020123	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58665161	0.84[ASN][1000 genomes]
rs638410	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
2	chr9:79080800-79117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:79081800-79117200	Weak transcription	Gastric	stomach
4	chr9:79082600-79117600	Weak transcription	NHLF	lung
5	chr9:79087600-79117400	Weak transcription	Colonic Mucosa	Colon
6	chr9:79089000-79103400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:79089000-79116400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:79091200-79108800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:79093400-79101200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr9:79093400-79102800	Weak transcription	Lung	lung
11	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
12	chr9:79093600-79103600	Weak transcription	Fetal Thymus	thymus
13	chr9:79093600-79111400	Weak transcription	NHDF-Ad	bronchial
14	chr9:79093600-79117200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:79093800-79101400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:79093800-79101400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:79093800-79101600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr9:79093800-79101600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:79093800-79102000	Weak transcription	Primary B cells from cord blood	blood
20	chr9:79093800-79102200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:79093800-79103000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:79093800-79105400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:79093800-79109000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:79093800-79116600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:79093800-79117000	Weak transcription	HMEC	breast
26	chr9:79093800-79118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:79094200-79102000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:79094200-79120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:79097000-79101200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:79097000-79102200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:79097000-79104000	Strong transcription	Fetal Intestine Small	intestine
32	chr9:79097200-79101800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:79097200-79104000	Weak transcription	Small Intestine	intestine
34	chr9:79097200-79117200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr9:79099200-79104000	Weak transcription	HSMM	muscle
36	chr9:79100400-79101800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:79100600-79105400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:79100800-79102000	Genic enhancers	Fetal Intestine Large	intestine
39	chr9:79100800-79102200	Genic enhancers	Osteobl	bone
40	chr9:79100800-79105600	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr9:79100800-79108000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:79101000-79101200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr9:79101000-79101400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:79101000-79101400	Enhancers	Placenta Amnion	Placenta Amnion
45	chr9:79101000-79101600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:79101000-79106600	Enhancers	Stomach Mucosa	stomach

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