Variant report

Variant	rs11144979
Chromosome Location	chr9:79226644-79226645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv527438	chr9:79225328-79230242	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11144979	TRIM63	trans	lymphoblastoid	seeQTL
rs11144979	HHIP	trans	lymphoblastoid	seeQTL

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79211000-79229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:79215400-79229400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:79218800-79227200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:79220200-79227400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:79221000-79229400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:79221200-79229800	Weak transcription	GM12878-XiMat	blood
7	chr9:79223600-79229400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:79223600-79230200	Weak transcription	Primary B cells from cord blood	blood
9	chr9:79224000-79226800	Active TSS	Fetal Intestine Large	intestine
10	chr9:79224200-79229000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:79224400-79229600	Enhancers	Stomach Mucosa	stomach
12	chr9:79224600-79239000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:79224600-79244400	Weak transcription	Brain Angular Gyrus	brain
14	chr9:79224800-79228400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:79224800-79228800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr9:79224800-79239600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:79225000-79227200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:79225000-79227800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:79225200-79239000	Weak transcription	Brain Anterior Caudate	brain
20	chr9:79225200-79239600	Weak transcription	Brain Substantia Nigra	brain
21	chr9:79225400-79233600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:79225400-79233600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:79225400-79239200	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:79225400-79244000	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:79225400-79265600	Weak transcription	Fetal Muscle Leg	muscle
26	chr9:79225600-79226800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr9:79225600-79227000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:79225600-79228800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr9:79225600-79229200	Weak transcription	Fetal Lung	lung
30	chr9:79225600-79229200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr9:79225600-79229600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:79225600-79229800	Weak transcription	Osteobl	bone
33	chr9:79225600-79232400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:79225600-79233400	Weak transcription	HSMMtube	muscle
35	chr9:79225800-79226800	Weak transcription	Small Intestine	intestine
36	chr9:79225800-79227400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:79225800-79227800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:79225800-79229600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:79225800-79232200	Weak transcription	Gastric	stomach
40	chr9:79225800-79232600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:79225800-79234000	Weak transcription	HSMM	muscle
42	chr9:79226200-79227600	Enhancers	Fetal Intestine Small	intestine
43	chr9:79226600-79227000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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