Variant report

Variant	rs11145001
Chromosome Location	chr9:79278851-79278852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79275845..79278992-chr9:79281949..79283802,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10869794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11144999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12000064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349868	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59087160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79260000-79282400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:79263600-79282200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
4	chr9:79266600-79282200	Weak transcription	Brain Anterior Caudate	brain
5	chr9:79269800-79282200	Weak transcription	Brain Substantia Nigra	brain
6	chr9:79270400-79303000	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:79271600-79285200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:79272600-79282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:79273600-79281200	Weak transcription	Colonic Mucosa	Colon
10	chr9:79273600-79282000	Weak transcription	Osteobl	bone
11	chr9:79273600-79282600	Weak transcription	Fetal Intestine Large	intestine
12	chr9:79274000-79279200	Weak transcription	Fetal Intestine Small	intestine
13	chr9:79274000-79280400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:79274000-79281200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:79274000-79282200	Weak transcription	NHDF-Ad	bronchial
16	chr9:79276800-79279000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:79276800-79281200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr9:79277200-79279200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:79277400-79279000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:79277400-79282000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:79277400-79282200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:79277600-79282200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:79277800-79279200	Enhancers	Stomach Mucosa	stomach
24	chr9:79278000-79279400	Enhancers	HUVEC	blood vessel
25	chr9:79278200-79279000	Weak transcription	HSMMtube	muscle
26	chr9:79278200-79281600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:79278200-79281800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:79278200-79282000	Weak transcription	K562	blood
29	chr9:79278200-79303400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:79278400-79279400	Strong transcription	HSMM	muscle
31	chr9:79278400-79281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:79278400-79281400	Weak transcription	Right Atrium	heart
33	chr9:79278400-79281600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:79278400-79282200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:79278400-79282200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:79278400-79282200	Weak transcription	Aorta	Aorta
37	chr9:79278400-79282200	Weak transcription	Gastric	stomach
38	chr9:79278400-79282200	Weak transcription	Spleen	Spleen
39	chr9:79278400-79282400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:79278600-79279000	Enhancers	Fetal Lung	lung
41	chr9:79278800-79279000	Strong transcription	Brain Angular Gyrus	brain
42	chr9:79278800-79280000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr9:79278800-79282200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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