Variant report

Variant	rs11146842
Chromosome Location	chrX:153008510-153008511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:152988359..152991594-chrX:153008144..153012059,7	K562	blood:
2	chrX:153008387..153011234-chrX:153166055..153168164,2	K562	blood:
3	chrX:153000455..153002543-chrX:153008295..153010600,2	K562	blood:
4	chrX:153007832..153011069-chrX:153218264..153220867,3	K562	blood:
5	chrX:153006182..153009077-chrX:153191495..153193129,2	K562	blood:
6	chrX:153007452..153011883-chrX:153057303..153062046,5	K562	blood:
7	chrX:153008130..153011118-chrX:153028713..153030835,3	K562	blood:
8	chrX:153006248..153009377-chrX:153057303..153061365,4	K562	blood:
9	chrX:153008274..153010877-chrX:153029335..153031971,2	K562	blood:
10	chrX:152986440..152994211-chrX:152995956..153010587,25	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000067829	Chromatin interaction
ENSG00000101986	Chromatin interaction
ENSG00000089820	Chromatin interaction
ENSG00000172534	Chromatin interaction
ENSG00000198753	Chromatin interaction
ENSG00000232725	Chromatin interaction
ENSG00000126895	Chromatin interaction
ENSG00000185825	Chromatin interaction
ENSG00000180879	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12244101	0.87[AFR][1000 genomes]
rs12250039	0.87[AFR][1000 genomes]
rs28886590	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531201	chrX:152864376-153410270	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv531228	chrX:152864376-153609161	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv531227	chrX:152864376-153655730	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	esv33199	chrX:152864376-153820241	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
5	nsv528291	chrX:152864376-153827637	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:152992000-153009800	Weak transcription	Small Intestine	intestine
2	chrX:152993200-153008800	Weak transcription	NHLF	lung
3	chrX:152993400-153009400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chrX:152993800-153008800	Weak transcription	Ovary	ovary
5	chrX:152993800-153008800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chrX:152993800-153009600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chrX:152993800-153030000	Weak transcription	Right Atrium	heart
8	chrX:152994000-153009600	Weak transcription	Brain Anterior Caudate	brain
9	chrX:152994000-153010200	Weak transcription	Brain Substantia Nigra	brain
10	chrX:152994600-153009600	Weak transcription	Brain Germinal Matrix	brain
11	chrX:152994600-153009600	Weak transcription	Brain Hippocampus Middle	brain
12	chrX:152995200-153009400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chrX:152997800-153008600	Weak transcription	Fetal Lung	lung
14	chrX:152997800-153009600	Weak transcription	Osteobl	bone
15	chrX:152997800-153012200	Weak transcription	Hela-S3	cervix
16	chrX:152997800-153015800	Weak transcription	HepG2	liver
17	chrX:152998000-153008600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chrX:153000600-153009400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chrX:153001400-153008800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chrX:153002200-153009600	Weak transcription	Gastric	stomach
21	chrX:153002400-153008600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chrX:153002400-153009800	Weak transcription	Left Ventricle	heart
23	chrX:153002800-153008800	Weak transcription	Rectal Smooth Muscle	rectum
24	chrX:153002800-153009200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chrX:153002800-153009600	Weak transcription	Colon Smooth Muscle	Colon
26	chrX:153003000-153009600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chrX:153003000-153009600	Weak transcription	Brain Cingulate Gyrus	brain
28	chrX:153003000-153009800	Weak transcription	Thymus	Thymus
29	chrX:153003400-153009400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chrX:153004000-153010000	Weak transcription	Right Ventricle	heart
31	chrX:153004400-153009400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chrX:153004400-153009800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chrX:153004800-153009200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chrX:153005200-153011000	Enhancers	Primary B cells from cord blood	blood
35	chrX:153005200-153011000	Enhancers	Primary B cells from peripheral blood	blood
36	chrX:153005600-153008800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chrX:153005600-153009400	Weak transcription	NHEK	skin
38	chrX:153006000-153008600	Weak transcription	HMEC	breast
39	chrX:153006000-153008800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chrX:153006200-153008600	Weak transcription	Adipose Nuclei	Adipose
41	chrX:153006200-153008600	Weak transcription	Colonic Mucosa	Colon
42	chrX:153006200-153009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chrX:153006400-153008600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chrX:153006400-153008600	Weak transcription	Esophagus	oesophagus
45	chrX:153006400-153008600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chrX:153006400-153008800	Weak transcription	Liver	Liver
47	chrX:153006400-153008800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chrX:153006400-153008800	Enhancers	K562	blood
49	chrX:153006400-153009600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chrX:153006600-153009600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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