Variant report

Variant rs111471415
Chromosome Location chr18:29889307-29889308
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29868200-29889800 Weak transcription Brain Cingulate Gyrus brain
2 chr18:29868200-29923800 Weak transcription Gastric stomach
3 chr18:29878400-29890000 Weak transcription Fetal Kidney kidney
4 chr18:29878400-29896000 Weak transcription Brain Anterior Caudate brain
5 chr18:29878600-29890200 Weak transcription Brain Angular Gyrus brain
6 chr18:29878800-29890000 Weak transcription Fetal Brain Male brain
7 chr18:29880800-29897000 Weak transcription Lung lung
8 chr18:29881600-29892200 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr18:29882200-29890000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr18:29882800-29890000 Weak transcription Duodenum Mucosa Duodenum
11 chr18:29883000-29890800 Weak transcription Fetal Muscle Trunk muscle
12 chr18:29883000-29891400 Weak transcription Adipose Nuclei Adipose
13 chr18:29883000-29891600 Weak transcription Pancreas Pancrea
14 chr18:29883000-29895800 Weak transcription Stomach Mucosa stomach
15 chr18:29883000-29897000 Weak transcription Fetal Intestine Small intestine
16 chr18:29883000-29897000 Weak transcription Left Ventricle heart
17 chr18:29883400-29896800 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr18:29883800-29893000 Weak transcription Fetal Heart heart
19 chr18:29886600-29892000 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr18:29887400-29890200 Weak transcription Stomach Smooth Muscle stomach
21 chr18:29888000-29889400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr18:29888000-29891200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr18:29888200-29889400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr18:29888200-29889400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr18:29888200-29890400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr18:29888200-29891000 Enhancers Cortex derived primary cultured neurospheres brain
27 chr18:29888400-29889600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr18:29888600-29889400 Enhancers HUVEC blood vessel
29 chr18:29888600-29890400 Enhancers NH-A brain
30 chr18:29888800-29889400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
31 chr18:29888800-29889400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr18:29888800-29889400 Enhancers Aorta Aorta
33 chr18:29888800-29889400 Enhancers Esophagus oesophagus
34 chr18:29888800-29889400 Enhancers Fetal Stomach stomach
35 chr18:29888800-29889400 Enhancers Right Atrium heart
36 chr18:29888800-29889400 Enhancers Osteobl bone
37 chr18:29888800-29890200 Strong transcription Liver Liver
38 chr18:29888800-29890400 Enhancers Breast Myoepithelial Primary Cells Breast
39 chr18:29888800-29891000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr18:29888800-29891000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
41 chr18:29888800-29891000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
42 chr18:29888800-29891000 Enhancers Colon Smooth Muscle Colon
43 chr18:29889000-29889400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr18:29889000-29889400 Flanking Active TSS Muscle Satellite Cultured Cells --
45 chr18:29889000-29889400 Enhancers A549 lung
46 chr18:29889000-29889400 Enhancers Hela-S3 cervix
47 chr18:29889000-29889400 Enhancers HMEC breast
48 chr18:29889000-29889400 Flanking Active TSS HSMMtube muscle
49 chr18:29889000-29889400 Enhancers NHDF-Ad bronchial
50 chr18:29889000-29890400 Enhancers Duodenum Smooth Muscle Duodenum

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