Variant report

Variant	rs111480661
Chromosome Location	chr18:24994420-24994421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331699	chr18:24864438-25095929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv833601	chr18:24908240-25080975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24992000-24994600	Enhancers	HSMM	muscle
2	chr18:24993000-24994600	Enhancers	Colon Smooth Muscle	Colon
3	chr18:24993400-24994600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr18:24993400-24994600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr18:24993400-24995000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr18:24993400-24995000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr18:24993600-24994600	Enhancers	HSMMtube	muscle
8	chr18:24993600-24995800	Enhancers	Fetal Kidney	kidney
9	chr18:24993800-24994600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:24993800-24994600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr18:24993800-24994600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:24993800-24994800	Enhancers	Adipose Nuclei	Adipose
13	chr18:24993800-24995000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr18:24993800-24995000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr18:24993800-24995000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr18:24993800-24995000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr18:24993800-24996000	Enhancers	Fetal Intestine Small	intestine
18	chr18:24994000-24994600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr18:24994000-24994800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr18:24994000-24995000	Enhancers	Fetal Muscle Leg	muscle
21	chr18:24994200-24994600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr18:24994200-24994600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:24994200-24994600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr18:24994200-24995000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr18:24994400-24994800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:24994400-24994800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links