Variant report

Variant	rs11148178
Chromosome Location	chr13:50927887-50927888
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50697643..50701953-chr13:50927459..50931609,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv983747	chr13:50920787-50927900	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50915000-50928200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:50920800-50928200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr13:50926000-50928000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:50926000-50929000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr13:50926600-50929400	Enhancers	NHDF-Ad	bronchial
6	chr13:50926600-50933000	Enhancers	Liver	Liver
7	chr13:50926600-50934800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:50927000-50928600	Enhancers	HSMM	muscle
9	chr13:50927000-50928600	Enhancers	NH-A	brain
10	chr13:50927200-50928000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:50927200-50928200	Weak transcription	Fetal Kidney	kidney
12	chr13:50927200-50928600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:50927200-50928600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:50927200-50928800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:50927200-50928800	Enhancers	NHLF	lung
16	chr13:50927200-50930400	Enhancers	Fetal Thymus	thymus
17	chr13:50927400-50928200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr13:50927400-50928600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:50927400-50928600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:50927400-50928600	Enhancers	Fetal Muscle Leg	muscle
21	chr13:50927400-50929000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr13:50927400-50929400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr13:50927600-50928400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr13:50927600-50928600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:50927600-50929000	Enhancers	HSMMtube	muscle
26	chr13:50927600-50931400	Weak transcription	Left Ventricle	heart
27	chr13:50927600-50931400	Weak transcription	Psoas Muscle	Psoas
28	chr13:50927600-50931400	Weak transcription	HepG2	liver
29	chr13:50927800-50928600	Enhancers	Osteobl	bone
30	chr13:50927800-50931200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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