Variant report

Variant	rs11149345
Chromosome Location	chr13:85440825-85440826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10781940	0.82[ASN][1000 genomes]
rs10781941	0.89[ASN][1000 genomes]
rs10871207	0.89[ASN][1000 genomes]
rs11149334	0.86[ASN][1000 genomes]
rs1880704	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2091336	0.90[ASN][1000 genomes]
rs2368313	0.90[ASN][1000 genomes]
rs4910992	0.90[ASN][1000 genomes]
rs55997342	0.89[ASN][1000 genomes]
rs68100320	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7139558	0.87[ASN][1000 genomes]
rs9741415	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832667	chr13:85422787-85557377	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85440000-85441200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:85440200-85441200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:85440200-85441200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:85440200-85441200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:85440200-85442000	Enhancers	Hela-S3	cervix
6	chr13:85440400-85444200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:85440400-85444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:85440600-85441000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:85440600-85441000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:85440600-85442600	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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