Variant report

Variant	rs1115
Chromosome Location	chr1:151140732-151140733
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151023633..151025803-chr1:151140394..151141946,2	MCF-7	breast:
2	chr1:151136716..151140911-chr1:151168778..151172657,5	MCF-7	breast:
3	chr1:151029301..151033715-chr1:151136820..151141213,5	MCF-7	breast:
4	chr1:151138869..151140924-chr1:151225967..151227871,3	MCF-7	breast:
5	chr1:151137725..151143993-chr1:151144904..151151967,18	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNFAIP8L2-1	chr1:151140344-151140814	NONHSAT006369

No data

Variant related genes	Relation type
ENSG00000213190	Chromatin interaction
ENSG00000159352	Chromatin interaction
ENSG00000143398	Chromatin interaction
ENSG00000163157	Chromatin interaction
ENSG00000197622	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11204796	1.00[CHD][hapmap]
rs11554231	1.00[CHB][hapmap]
rs11581703	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs12042270	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs12076892	1.00[CHD][hapmap]
rs12138655	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs12142028	1.00[LWK][hapmap]
rs12727567	1.00[LWK][hapmap]
rs12744045	1.00[LWK][hapmap]
rs16832595	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs16832602	1.00[CHB][hapmap]
rs2233843	1.00[CHB][hapmap]
rs2233851	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
5	nsv831559	chr1:151109459-151239921	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv831570	chr1:151129020-151281778	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151139400-151140800	Genic enhancers	Primary T cells fromperipheralblood	blood
2	chr1:151139400-151142000	Weak transcription	Aorta	Aorta
3	chr1:151139600-151140800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:151139600-151143000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:151139600-151143000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:151139600-151144800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:151139600-151145800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:151139600-151147000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:151139600-151148400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:151139600-151149800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:151139600-151158600	Strong transcription	Fetal Stomach	stomach
12	chr1:151139600-151158600	Strong transcription	Lung	lung
13	chr1:151139600-151161600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:151139800-151141000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:151139800-151141000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:151139800-151141200	Weak transcription	Gastric	stomach
17	chr1:151139800-151141800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
18	chr1:151139800-151142200	Weak transcription	Esophagus	oesophagus
19	chr1:151139800-151142400	Strong transcription	Colon Smooth Muscle	Colon
20	chr1:151139800-151142600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:151139800-151142600	Strong transcription	Fetal Lung	lung
22	chr1:151139800-151143200	Strong transcription	Left Ventricle	heart
23	chr1:151139800-151143400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:151139800-151143400	Strong transcription	Brain Angular Gyrus	brain
25	chr1:151139800-151143600	Strong transcription	Brain Substantia Nigra	brain
26	chr1:151139800-151144000	Strong transcription	Brain Cingulate Gyrus	brain
27	chr1:151139800-151144000	Strong transcription	Fetal Kidney	kidney
28	chr1:151139800-151144000	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr1:151139800-151144000	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:151139800-151144200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:151139800-151144200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:151139800-151144200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr1:151139800-151144400	Strong transcription	Primary T cells from cord blood	blood
34	chr1:151139800-151146800	Weak transcription	Fetal Brain Male	brain
35	chr1:151139800-151147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:151139800-151148200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr1:151139800-151149000	Weak transcription	Small Intestine	intestine
38	chr1:151139800-151158600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:151139800-151158600	Strong transcription	Fetal Intestine Small	intestine
40	chr1:151139800-151159000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr1:151139800-151159400	Strong transcription	Fetal Brain Female	brain
42	chr1:151140000-151140800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:151140000-151140800	Genic enhancers	HepG2	liver
44	chr1:151140000-151140800	Genic enhancers	HSMM	muscle
45	chr1:151140000-151141200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr1:151140000-151141200	Weak transcription	Colonic Mucosa	Colon
47	chr1:151140000-151141400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:151140000-151141400	Weak transcription	Pancreas	Pancrea
49	chr1:151140000-151141400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:151140000-151141400	Weak transcription	HSMMtube	muscle

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