Variant report

Variant	rs11150644
Chromosome Location	chr16:31860504-31860505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31856392..31858498-chr16:31858989..31861220,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1045483	0.95[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11642525	0.95[CEU][hapmap];0.89[CHB][hapmap]
rs12386038	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes]
rs12921028	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs1304163	0.95[CEU][hapmap];0.83[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap]
rs1406178	0.95[CEU][hapmap];0.83[MEX][hapmap]
rs1468158	0.95[CEU][hapmap];0.83[MEX][hapmap]
rs1468159	0.95[CEU][hapmap];0.83[MEX][hapmap]
rs1528317	0.95[CEU][hapmap];0.83[MEX][hapmap]
rs1599855	0.95[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1881318	0.95[CEU][hapmap]
rs2091521	0.95[CEU][hapmap]
rs2141349	0.91[CEU][hapmap]
rs3751738	0.95[CEU][hapmap]
rs3751742	0.95[CEU][hapmap];0.83[MEX][hapmap]
rs4632148	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap]
rs57647401	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7196252	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7197963	0.95[CEU][hapmap];0.83[MEX][hapmap]
rs7198038	0.95[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7359491	0.95[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap]
rs8048741	0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap]
rs929209	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap]
rs9927103	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
2	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3446880	chr16:31734687-31891223	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31860000-31861200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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