Variant report

Variant	rs11153847
Chromosome Location	chr6:120120650-120120651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10457364	0.95[ASN][1000 genomes]
rs10499094	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11965378	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202174	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204573	1.00[CHB][hapmap]
rs4945648	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731487	1.00[CHB][hapmap]
rs7771093	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120120400-120121200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:120120400-120121600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:120120600-120121000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:120120600-120121200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:120120600-120121200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:120120600-120121400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:120120600-120121600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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