Variant report

Variant	rs11153921
Chromosome Location	chr6:120879585-120879586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1203045	0.95[EUR][1000 genomes]
rs1203067	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1203070	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1203077	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1203079	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1203090	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1209103	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1209104	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12213560	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1933830	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4945661	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62443145	0.86[ASN][1000 genomes]
rs7768367	0.86[ASN][1000 genomes]
rs9401296	0.99[ASN][1000 genomes]
rs962312	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs962313	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv604569	chr6:120795089-120887820	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428495	chr6:120861159-120954224	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120879200-120879600	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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